Gone Fishing

Native Species



15
Feb

Gone Fishing

As the weekend dawns and California slumbers, the sportfishers descend, like clockwork, on the banks and waves of the San Francisco Bay and Sacramento-San Joaquin Delta. They carry nets for herring or poles for sturgeon, heavy and light tackle, bloodworms or anchovy or any number of delectable morsels to attract the desired target. They tread industrialized East Bay shorelines and marshy Delta banks, hop aboard sporty six-pack boats for more ambitious trips or humbler craft for a leisurely solo excursion. They catch (and often release) a smorgasbord of species: halibut, kingfish (white croaker), or sturgeon around the Bay, or striped bass, salmon, and black bass in the many tendrils of the Delta. “Here, you get both worlds, fresh and salt,”...
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15
Feb

South Bay Trawls Show Fish Like Restored Shores

Twelve years ago, scientists at UC Davis began a survey of the southern end of San Francisco Bay — the Lower South Bay — to see how fish responded to the South Bay Salt Ponds Restoration Project. They discovered an unexpectedly diverse and robust aquatic community and a previously unknown spawning ground for the longfin smelt (Spirinchus thaleichthys), listed as endangered in California and a candidate for federal protection because of its declining numbers. The team, led first by Jim Hobbs and now by Levi Lewis, has complied an invaluable long-term dataset and enhanced our understanding of the surprising ecosystems of the bottom of the Bay. In addition to journal publications, their findings have been shared in blog posts by...
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15
Feb

Big Boulders, Big Benefits to Coyote Creek Fish

As a source of flowing water, upper Coyote Creek is unreliable at best. Though storms swell its banks in winter, Mediterranean-climate summers shrink this South Bay stream to a series of isolated pools by August. “By October right before the rains come, we’re down to these really small pools that have all the fish in them,” says retired U.S. Environmental Protection Agency ecologist Rob Leidy. Leidy and UC Berkeley fish ecologist Stephanie Carlson began monitoring the annual dry-down of upper Coyote Creek in 2014, with the help of Hana Moidu and other graduate students. The creek itself originates in Henry W. Coe State Park and flows to the Bay through Coyote and Anderson lakes south of San Jose. The scientists...
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15
Feb

Murky Future for Herring

This winter, herring spawns in San Francisco Bay – visible from land as frenzies of birds and pinnipeds and even water discolored by herring milt – have been few and far between, according to recreational fishers who pursue the fish each year using hand-thrown cast nets. With few other eyes on the resource, it seems reasonable to assume that the downward trend in biomass documented through the 2019-2020 winter has continued. But nobody knows for sure. For decades, the California Department of Fish and Wildlife has carefully monitored and assessed the Bay’s herring runs. The research used a variety of surveys to produce annual biomass tonnage estimates almost every year since the 1970s. But in recent years a new herring...
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15
Feb

Natives Who Can Rough It

Name a native fish. One that spends lots of time in the Delta. One that’s not a salmon, smelt, or sturgeon. One whose population isn’t plummeting, and in fact seems to be doing just fine. By now the list of possibilities has been shortened severely — though not exhausted. A number of native fish still ply Delta waters in stable numbers, but precisely because there are no restoration projects, monitoring programs, or conservation efforts designed to save them — or perhaps because they’re not game fish, or particularly large, or traditionally “charismatic” —  theirs are not household names. To the extent that they are recognized by the general public at all, some are even referred to, somewhat derisively, as “rough”...
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15
Feb

Let’s Not Forget Suisun Marsh

I started sampling the fishes of Suisun Marsh in 1979 because one of my UC Davis graduate students was looking for a place to study tule perch, a live-bearing native fish. We found not only a lot of tule perch in the marsh, but also an abundance of other native fishes. Clearly, this was a good place to study species for which we had little information at that time. Two things helped with our new project. First, sampling boats could be launched less than an hour’s drive from campus. Second, the California Department of Water Resources needed a study to examine effects of new tidal gates on fish. The gates are designed to retain fresher water in the marsh to...
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15
Feb

Hatchery Delta Smelt Released to Wild

On a mild day between rainstorms in mid-December, wildlife biologists outfitted in rubber boots and orange lifejackets load drum after drum of precious cargo onto a small boat docked in Rio Vista, a town on the Sacramento River in the Sacramento-San Joaquin Delta. There is little fanfare but the occasion is nonetheless momentous. The shiny silver drums contain thousands of Delta smelt — finger-size imperiled fish unique to the Delta — that were raised in a conservation hatchery. Today marks the inaugural release of captive smelt into the cold, murky waters of their native home. “For the first time, we’re seeing if it’s possible for hatchery-raised Delta smelt to be released into the wild, survive, and successfully reproduce,” says Katherine...
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15
Feb

Sturdy Sturgeon

A 90-year-old Australian lungfish at San Francisco’s Academy of Sciences has received a lot of press lately, but there is a wild fish species living in the San Francisco Bay that has the potential to live that long or longer — or so we think. While one white sturgeon caught in the Columbia River Basin was estimated to be 104 years old, the life expectancy of white sturgeon, Acipenser transmontanus, which includes the Central Valley population endemic to the San Francisco Bay, is hard to pin down. “There are old ones out there, but it’s really hard to give a number because we just don’t have it,” says John Kelly, statewide sturgeon coordinator for the California Department of Fish and...
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15
Feb

The Complexities of Monitoring Steelhead

For more than two decades, steelhead — listed as federally threatened in 1997 — have been monitored throughout the state. However, until recently that monitoring has been a haphazard affair. Each local jurisdiction has established a different system, using different methods with different degrees of intensity, according to a 2018 study examining monitoring within the Central Valley and its environs. In some areas, primarily the Sacramento River watershed, which drains the vast northern part of the valley, data has been collected more comprehensively. In other areas, such as the San Joaquin River system to the south, more gaps remain. And in general, monitoring tended to focus solely on migrating numbers and not more detailed life history demographics. “We need to...
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15
Feb

Better Living Through Fish – Editor’s Desk

I come from a long line of fisherfolk. My grandparents had a tiny cabin on a Quebec lake. We visited some summers. My grandfather let me drive the big white speedboat at a snail’s pace while he smoked cigars and trolled for trout off the stern. Once, when I caught one bigger than his catch-of-the-day, he “accidentally” knocked it back into the lake with the net. On the dock, we’d sunbathe while he cast lines overhead with a precision worthy of the movie A River Runs Through It. At the lake, we ate trout and eggs, trout salad, baked trout. I survived on spoonfuls of Cool Whip. (Photo above is editor as a teenager with Kay Rubbra, my grandmother, and...
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15
Dec

Scientists in the Central Valley are honing a novel way of giving young salmon the nourishing benefits of wintertime floodwaters without undertaking costly floodplain restoration work.

The method, being practiced along the Sacramento River, mimics the flood patterns of natural Sacramento Valley wetlands by diverting water onto floodplain farm fields, retaining it there for three weeks, and finally flushing the water—now rich with zooplankton and invertebrate protein—back into the river. Onsite studies have shown that salmon smolts grow faster when provided with this supplemental nutrition source, giving the method promise as a tool for boosting survival rates of outmigrating juveniles and, ultimately, helping sustain imperiled Chinook runs.     Jacob Katz, a California Trout biologist helping lead the project, explains that flushing river water over dry land and then back into the river effectively “reenergizes the food web,” allowing terrestrial carbon to flow into the water where...
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15
Dec

A large pulse of water sent through the Yolo Bypass in summer 2016 boosted phytoplankton biomass and food web conditions in Cache Slough and the lower Sacramento River, a new report confirms.

 “Our goal was to improve estuarine habitat by increasing net flows through the Cache Slough Complex to enhance downstream transport of lower trophic-level resources, an important driver for fish such as the endangered Delta Smelt,” write the authors—including esteemed (and recently retired) California Department of Water Resources lead scientist Ted Sommer—in the latest issue of San Francisco Estuary and Watershed Science. The pulse occurred over three weeks in July, a time when flows in the region above Cache Slough are often negative (meaning they go “upstream”) due to agricultural diversions and low freshwater inflow. Producing the pulse, which increased downstream flows from about negative-two cubic meters per second to a peak of 15 cubic meters per second in the Toe Drain...
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15
Dec

New Way to Sleuth Out Fish IDs in the Field

The CRISPR technique used to edit DNA has been formulated into a tool that can distinguish between similar-looking California fish species for conservation research. Called SHERLOCK (Specific High-sensitivity Enzymatic Reporter unLOCKing), the tool can tell the difference between species with speed and accuracy. Better yet, it is both inexpensive and can be run while researchers are in the field. “It puts the power in the hands of the field biologist to make the most informed decision versus waiting sometimes days or weeks for lab results,” says Melinda Baerwald, an environmental program manager with the California Department of Water Resources. Traditionally, scientists wishing to verify the identity of a salmon or a smelt had to send samples of fish tissue to...
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25
Oct

DFW 150 Years on Patrol, and Work Still Dangerous

Lieutenant James Ober worked as a fish biologist with the California Department of Fish and Wildlife for a year before joining its Law Enforcement Division in 2009. “I enjoy interacting with hunters and fishers. Most of them have a great appreciation for the resources and want to protect them,” says Ober about being on patrol. Ober belongs to the tradition of wildlife officers, both personally and professionally. His fifth great grandfather, Edwin H. Ober, was an officer and biologist during the early 20th century, making James the second wildlife officer in his family. Ober is also one of the tens of thousands of officers who have worked to protect the natural resources of the San Francisco Bay since 1871. This...
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25
Oct

Reconnecting Mill Creek to its Watershed

For thousands of years, Coho salmon and steelhead returned to spawn in the cold waters of Mill Creek, part of the San Vicente watershed in the mountains above Santa Cruz. This ended when a mining and logging company dammed the creek in the early 20th century. Now, an ambitious conservation initiative has succeeded in removing the dam, bringing people together across local land trusts, Native American groups, regional agencies, and researchers from multiple universities. Valentin Lopez, chairman of the Amah Mutsun Tribal Band, spoke about the dam removal in his session of the Estuary Summit. Mill Creek Dam removal. Photo: Ian Bornarth, courtesy Sempervirens Fund. The San Vicente Redwoods is a large stretch of forest sitting above the coastal town...
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25
Oct

Can Birds and Solar Float on the Same Ponds?

In the late 2000s, small-aircraft pilots gliding above the Napa countryside began to notice an odd, glassy glint reflecting off a tennis-court-size patch of land between vineyards. Large solar arrays were less common back then, but the solar panels themselves likely weren’t the reason planes doubled back, flying low, for a closer look: it was their placement in the middle of a pond. Floating solar panels, like the ones Napa’s Far Niente winery finished installing in 2009, could be a real windfall for a watery Bay-Delta region seeking carbon-free energy. Secured to buoyant platforms or pontoons, low over the water’s surface and at a slight angle, the panels can cover a large area without competing with agriculture or housing for primo sun-drenched land. They slow evaporation from the water sources they...
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25
Oct

Fog Cool for Oysters

On bright hot days, standing in the shade can feel a lot better than standing in the sun. The same goes for oysters living in the inter-tidal shallows of San Francisco Bay. When the tide is low, the oysters bake in the sun. During extreme heat events they can even die. But in this coastal region there is one factor that could help mediate the heat: fog. Indeed, over the past year, San Francisco State graduate student Alexandra (Allie) Margulies has been examining fog data and monitoring oyster density at five sites around the Bay, and recruitment at 10 sites, building on a long-term monitoring dataset collected by the San Francisco Bay National Estuarine Research Reserve.  “Fog can help scatter...
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Smelt cam photo
19
Aug

Monitoring Delta smelt with an underwater camera could be safer and more effective than with a traditional trawl.

Standard smelt surveys rely on the use of boat-driven nets, which trap fish by funneling them from the wide mouth of the net to the closed end (known as the cod end). To check their catch, researchers must pull the net and its contents from the water. But this additional handling can harm and even kill the same fish that wildlife agencies are trying to save with the support of robust, long-running monitoring efforts. There may be a better way: According to a new study in the June 2021 issue of San Francisco Estuary and Watershed Science, the use of an underwater camera—the “SmeltCam,” developed about a decade ago by U.S. Geological Survey (USGS) research fish biologist Frederick Feyrer—could provide...
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photograph of beautiful tree overhangin a river
19
Aug

Modern water management practices damp down natural river patterns and produce streamside forests that “live fast and die young.”

Such practices also hasten the destruction of an important and dwindling habitat. Melissa Rohde of the State University of New York College of Environmental Science and Forestry (SUNY-ESF) and colleagues analyzed five years of high-resolution satellite and water resource data showing vegetation greenness along California rivers. Trees growing alongside the 30 percent of state rivers with natural flows decreased in greenness from the wet spring through the dry summer months, the scientists report in the Proceedings of the National Academy of Sciences, demonstrating they rely on groundwater to make it through the dry season. By contrast, woodlands along the 70% of streams receiving water from dams, wastewater treatment plants, and other human sources kept up the same vigorous levels of...
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19
Aug

Leading with Science: DWR’s Ted Sommer To Retire

A few months before his retirement in October 2021, Ariel Rubissow Okamoto asked Ted Sommer, lead scientist for the California Department of Water Resources, to reflect on his accomplishments and hopes for the future. Sommer is a leading researcher on native fishes, and has published more than 60 research articles in peer-reviewed scientific publications since 2001. Sommer began his long career at DWR in 1991 under Dr. Randy Brown. Early on he founded the Feather River fish monitoring program, but his work moved progressively downstream to the Bay-Delta, where he has also helped manage the Interagency Ecological Program since the late 1990s. According to his longtime colleague Jim Cloern, an emeritus scientist with the United States Geological Survey: “Ted has a...
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